Morphological Properties

Morphological properties

This sub-section examines the consistency of morphometric properties of 3D reconstructed morphologies in the reconstructed microcircuit against relevant literature.

Evaluated properties include Sholl statistics, dendritic and axonal lengths, dendritic and axonal extents, soma diameters, dendritic and axonal segment branch order and path distance statistics.

The results of the consistency check were categorized as input, consistent, possibly consistent, inconsistent, not implemented or not applicable based on agreement with a given evaluation criterion.

	17 paper(s)
	9 paper(s)
	27 paper(s)
	10 paper(s)
	0 paper(s)

consistent - Medini, P. - Cell-type–specific sub- and suprathreshold receptive fields of layer 4 and layer 2/3 pyramids in rat primary visual cortex

consistent - Joachim Luebke - Columnar Organization of Dendrites and Axons of Single and Synaptically Coupled Excitatory Spiny Neurons in Layer 4 of the Rat Barrel Cortex

consistent - j.f. Staiger - Functional Diversity of Layer IV spiny neurons in rat somatosensory cortex: quantitative morphology of electrophysiologically characterized and biocytin labeled cells

consistent - Staiger, Jochen F. - Functional Diversity of Layer IV Spiny Neurons in Rat Somatosensory Cortex: Quantitative Morphology of Electrophysiologically Characterized and Biocytin Labeled Cells

consistent - Martin Deschenes - Intracortical axonal projections of lamina VI cells of the primary somatosensory cortex in the rat: a single-cell labeling study.

consistent - Moritz Helmstaedter, Bert Sakmann and Dirk Feldmeyer - L2/3 interneuron groups defined by multiparameter analysis of axonal projection, dendritic geometry, and electrical excitability

consistent - Paul L.A. Gabbott, Brian G.M. Dickie, R. Roy Vaid - local circuit neurones in the medial prefrontal cortex (areas 25,32, and 24b) in the rat: Morphology and quantitative distribution

consistent - Moritz Helmstaedter, Bert Sakmann and Dirk Feldmeyer - Monosynaptic connections between pairs of L5A pyramidal neurons in columns of juvenile rat somatosensory cortex.

consistent - Krieger, P. , Kuner, T. and Sakmann B. - Synaptic connections between Layer 5B pyramidal neurons in mouse somatosensory cortex are independent of apical dendrite bundling

consistent - Ted L. Petit - The pattern of dendritic development in the cerebral cortex of the rat

consistent - Moritz Helmstaedter, Bert Sakmann and Dirk Feldmeyer - The Relation between Dendritic Geometry, Electrical Excitability, and Axonal Projections of L2/3 Interneurons in Rat Barrel Cortex

inconsistent - Moritz Helmstaedter, Bert Sakmann and Dirk Feldmeyer - L2/3 interneuron groups defined by multiparameter analysis of axonal projection, dendritic geometry, and electrical excitability

inconsistent - Yasuhiro R. Tanaka, Yasuyo H. Tanaka, Mitchiteru Konna, Fumino Fujiyama, Takahiro Sonomura, Keiko Okamoto-Futura, Hiroshi Kameda, Hiroyuki Hiori, Takahiro Futura, Kouichi C. Nakamura, and Takeshi Kaneko - Local Connections of Excitatory Neurons to corticothalamic Neurons in the Rat Barrel Cortex

inconsistent - Zhong-Wei Zhang - Maturation of Layer V Pyramidal Neurons in the Rat Prefrontal Cortex: Intrinsic and Synaptic Function

inconsistent - Joachim Luebke, Arnd roth, Bert Sakmann - Morphometric Analysis of the columnar innervation domain of neurons connecting Layer 4 and Layer 2/3 of juvenile rat barrel cortex

inconsistent - Veronica Egger - Subcolumnar Dendritic and axonal organization of spiny stellate and star pyramidal neurons within a barrel in rat somatosensory cortex

not applicable - Giogio A. Ascoli - Automated reconstruction of neuronal morphology: An Overview

not applicable - Susan L. Wearne - Automated reconstruction of three-dimensional neuronal morphology from laser scanning microscopy images.

not applicable - David Prince - Burst generating and regular spiking layer 5 pyramidal neurons of rat neocortex have different morphological features

not applicable - Stehen J Smith - Circuit reconstruction tools today

not applicable - Alan U. Larkman - Dendritic morphology of pyramidal neurones of the visual cortex of the rat: I. Branching pattern

not applicable - Larkman, Alan U. - Dendritic morphology of pyramidal neurones of the visual cortex of the rat: III. Spine distributions

not applicable - Song, NY - Differences in developmental changes in GABAergic response between bushy and stellate cells in the rat anteroventral cochlear nucleus.

not applicable - Moritz Helmstaedter, Bert Sakmann and Dirk Feldmeyer - Efficient recruitment of layer 2/3 interneurons by layer 4 input in single columns of rat somatosensory cortex.

not applicable - Liao, C.C. - Evidence for structural and functional changes of subplate neurons in developing rat barrel cortex

not applicable - Yasuo Kawaguchi - Groupings of nonpyramidal and pyramidal cells with specific physiological and morphological characteristics in rat frontal cortex

not applicable - Liguz-Lecznar, M. - Impairment of experience-dependent cortical plasticity in aged mice

not applicable - Zhong-Wei Zhang and Martin Deschenes - Intracortical Axonal Projections of Lamina VI cells of the Primary Somatosensory Cortex in the Rat: A single-Cell Labelling Study

not applicable - Monika Jadi - Location-Dependent Effects of Inhibition on Local Spiking in Pyramidal Neuron Dendrites

not applicable - Harry B M Uylings1,2,3 and Jaap van Pelt1 - Measures for quantifying dendritic arborizations

not applicable - Diamond, Marian C. - Morphological changes in the young, adult and aging rat cerebral cortex, hippocampus, and diencephalon

not applicable - J.I. Arellano, A. Espinosa, J. DeFelipe - non - synaptic dendritic spines in neocortex

not applicable - Zaitsev A V - P/Q-type, but not N-type, calcium channels mediate GABA release from fast-spiking interneurons to pyramidal cells in rat prefrontal cortex .

not applicable - The Petilla Interneuron Nomenclature Group (PING)* - Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

not applicable - Nelson Spruston - Pyramidal neurons: dendritic structure and synaptic integration

not applicable - Nelson Spruston - Pyramidal neurons: dendritic structureand synaptic integration

not applicable - Giorgio A. Ascoli, - Quantitative Morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories.

not applicable - J Deuchars, D C West and A M Thomson - Relationships between morphology and physiology of pyramid-pyramid single axon connections in rat neocortex in vitro

not applicable - Christie, J.M. & Jahr, C.E. - Selective Expression of Ligand-Gated Ion Channels in L5 Pyramidal Cell Axons

not applicable - Kaiserman-abramof, I.R - The small pyramidal neuron of the rat cerebral cortex. The perikaryon, dendrites and spines.

not applicable - Svoboda, Karel - The subcellular organization of neocortical excitatory

not applicable - Gyorgy Buzsaki - Three dimensional reconstruction of the axon arbor of a CA3 pyramidal cell recorded and filled in vivo

possibly consistent - Yasao Kawaguchi - Axon Branching and Synaptic Bouton Phenotypes in GABAergic Nonpyramidal Cell Subtypes

possibly consistent - Staiger JF, Masanneck C, Schleicher A, Zuschratter W. - Calbindin-containing interneurons are a target for VIP-immunoreactive synapses in rat primary somatosensory cortex.

possibly consistent - Joachim Luebke - Columnar organization of dendrites and axons of single and synaptically coupled excitatory spiny neurons in layer 4 of the rat barrel cortex.

possibly consistent - Rafael Yuste - dendritic size of pyramidal neurons differs among mouse cortical regions

possibly consistent - Ballesteros - Yanez, R. Benavides - Piccione, J. DeFelipe - Density and morphology of dendritic spines in mouse neocortex

possibly consistent - Moritz Helmstaedter1, Bert Sakmann1 and Dirk Feldmeyer - Neuronal Correlates of Local, Lateral, and Translaminar Inhibition with Reference to Cortical Columns

possibly consistent - Nicolas Narboux-Nême - Neurotransmitter Release at the Thalamocortical Synapse Instructs Barrel Formation But Not Axon Patterning in the Somatosensory Cortex

possibly consistent - Areti Tsiola - Quantitative Morphologic Classification of Layer 5 Neurons from Mouse Primary Visual Cortex

possibly consistent - Veronica Egger1, Thomas Nevian2 and Randy M. Bruno - Subcolumnar Dendritic and Axonal Organization of Spiny Stellate and Star Pyramid Neurons within a Barrel in Rat Somatosensory Cortex

possibly consistent - Marcel Oberlaender - Three-dimensional axon morphologies of individual layer 5 neurons indicate cell type-specific intracortical pathways for whisker motion and touch